species:   Fugra
pid:       PID0920
parent:    FgmilR-7dps-42
paralog:   
locus:     NC_026475.1:3717603-3717663
matures:   ['UGAGAAGGUCGAAGACAUGUCGC', 'GCUGUCUCUCCUACAUCGUUC']
srr:       SRR6516243
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.GCF_000240135.3_ASM24013v3_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516243.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516243.cram NC_026475.1:3717603-3717663

33 out of bounds
16 alignments
12 proper strand
2 stranded perfect matches

    *************************     ***********************    
AUUGGUUGAGAAGGUCGAAGACAUGUCGCCCAUGGCGCUGUCUCUCCUACAUCGUUCCAAU
(((((.((((.(((..((.((((.(.((((...))))))))))).))).).)))..)))))
------UGAGAAGGUCGAAGACAUGUCGC-------------------------------- l=23 a=0 c
------------------------------------GCUGUCUCUCCUACAUCGUUC---- l=21 a=0 c*
--------------------------------UGGCGCUGUCUCUCCUACAU--------- l=20 a=2 ma
------------------------------------GCUGUCUCUCCUACAUCGUUC---- l=21 a=0 ma*

--------------------------------UGGCGCUGUCUCUCCUACAa--------- l=20 a=4 
--------------------------------UGGCGCUGUCUCUCCUACAU--------- l=20 a=2 (ma)
--------------------------------UGGCGCUGUCUCUCCUACAc--------- l=20 a=1 
--------------------------------UGGCGCUGUCUCUCCUACAUg-------- l=21 a=1 
--------------------------------UGGCGCUGUCUCUCCUACAUCa------- l=22 a=1 
------UGAGAAGGUCGAAGACAUGUa---------------------------------- l=21 a=3 

mb-00011
ax-1011011
ku-01
ss-111110101100
fn-001
